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<li class="navelem"><a class="el" href="dir_3dc1dabd28ba78e072d14d3fcfc90454.html">SPHINXsys</a></li><li class="navelem"><a class="el" href="dir_48ea983704c43b6d88c1fa3f4d09e369.html">src</a></li><li class="navelem"><a class="el" href="dir_0a0d9ef1793521534f0094f317758287.html">shared</a></li><li class="navelem"><a class="el" href="dir_18bd2fbc0c396aa3503f5e750d6566c2.html">particles</a></li>  </ul>
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<div class="title">base_particles.h</div>  </div>
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<a href="base__particles_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">/* -------------------------------------------------------------------------*</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">*                               SPHinXsys                                   *</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">* --------------------------------------------------------------------------*</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">* SPHinXsys (pronunciation: s&#39;finksis) is an acronym from Smoothed Particle *</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">* Hydrodynamics for industrial compleX systems. It provides C++ APIs for    *</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">* physical accurate simulation and aims to model coupled industrial dynamic *</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">* systems including fluid, solid, multi-body dynamics and beyond with SPH   *</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">* (smoothed particle hydrodynamics), a meshless computational method using  *</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">* particle discretization.                                                  *</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">*                                                                           *</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">* SPHinXsys is partially funded by German Research Foundation               *</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">* (Deutsche Forschungsgemeinschaft) DFG HU1527/6-1, HU1527/10-1             *</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">* and HU1527/12-1.                                                          *</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">*                                                                           *</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">* Portions copyright (c) 2017-2020 Technical University of Munich and       *</span></div>
<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">* the authors&#39; affiliations.                                                *</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">*                                                                           *</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">* Licensed under the Apache License, Version 2.0 (the &quot;License&quot;); you may   *</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">* not use this file except in compliance with the License. You may obtain a *</span></div>
<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="comment">* copy of the License at http://www.apache.org/licenses/LICENSE-2.0.        *</span></div>
<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="comment">*                                                                           *</span></div>
<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">* --------------------------------------------------------------------------*/</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="preprocessor">#pragma once</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160; </div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="preprocessor">#include &quot;base_data_package.h&quot;</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="sph__data__conainers_8h.html">sph_data_conainers.h</a>&quot;</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="xml__engine_8h.html">xml_engine.h</a>&quot;</span></div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160; </div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160; </div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="keyword">namespace </span><a class="code" href="namespace_s_p_h.html">SPH</a> </div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;{</div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160; </div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;    <span class="keyword">class </span>SPHBody;</div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;    <span class="keyword">class </span>BaseMaterial;</div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160; </div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html">   65</a></span>&#160;    <span class="keyword">class </span><a class="code" href="class_s_p_h_1_1_base_particles.html">BaseParticles</a></div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    {</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    <span class="keyword">public</span>:</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        <a class="code" href="class_s_p_h_1_1_base_particles.html">BaseParticles</a>(<a class="code" href="class_s_p_h_1_1_s_p_h_body.html">SPHBody</a>* body, <a class="code" href="class_s_p_h_1_1_base_material.html">BaseMaterial</a>* base_material);</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        <a class="code" href="class_s_p_h_1_1_base_particles.html">BaseParticles</a>(<a class="code" href="class_s_p_h_1_1_s_p_h_body.html">SPHBody</a>* body);</div>
<div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a6b6da33563d4725affb544d20848ea58">   70</a></span>&#160;        <span class="keyword">virtual</span> ~<a class="code" href="class_s_p_h_1_1_base_particles.html">BaseParticles</a>() {};</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160; </div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        <a class="code" href="class_s_p_h_1_1_base_material.html">BaseMaterial</a>* <a class="code" href="class_s_p_h_1_1_base_particles.html#a6b6da33563d4725affb544d20848ea58">base_material_</a>; </div>
<div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#ad56cde78e1cf8ca57bae114d88a23c3c">   74</a></span>&#160;        StdLargeVec&lt;Vecd&gt; <a class="code" href="class_s_p_h_1_1_base_particles.html#ad56cde78e1cf8ca57bae114d88a23c3c">pos_n_</a>;   </div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#adf142120d4165071c15dc4974f1f8df7">   75</a></span>&#160;        StdLargeVec&lt;Vecd&gt; <a class="code" href="class_s_p_h_1_1_base_particles.html#adf142120d4165071c15dc4974f1f8df7">vel_n_</a>;   </div>
<div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a009d3448cf7a69fb162ede6afd34f5ee">   76</a></span>&#160;        StdLargeVec&lt;Vecd&gt; <a class="code" href="class_s_p_h_1_1_base_particles.html#a009d3448cf7a69fb162ede6afd34f5ee">dvel_dt_</a>; </div>
<div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#aa6aa918af115e49d6b98137c00b015e7">   77</a></span>&#160;        StdLargeVec&lt;Vecd&gt; <a class="code" href="class_s_p_h_1_1_base_particles.html#aa6aa918af115e49d6b98137c00b015e7">dvel_dt_others_</a>; </div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#aeff9ca6449d936cf70a2ace2fb9d92d2">   79</a></span>&#160;        StdLargeVec&lt;Real&gt; <a class="code" href="class_s_p_h_1_1_base_particles.html#aeff9ca6449d936cf70a2ace2fb9d92d2">Vol_</a>;     </div>
<div class="line"><a name="l00080"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a06420b0b549bd31847cc56cf86830091">   80</a></span>&#160;        StdLargeVec&lt;Real&gt; <a class="code" href="class_s_p_h_1_1_base_particles.html#a06420b0b549bd31847cc56cf86830091">rho_n_</a>;   </div>
<div class="line"><a name="l00081"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a02c7fc3468dcf92154a1a60c2a170e1a">   81</a></span>&#160;        StdLargeVec&lt;Real&gt; <a class="code" href="class_s_p_h_1_1_base_particles.html#a02c7fc3468dcf92154a1a60c2a170e1a">mass_</a>;    </div>
<div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;        <span class="comment">//----------------------------------------------------------------------</span></div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;        <span class="comment">//Global information for all particles</span></div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;        <span class="comment">//----------------------------------------------------------------------</span></div>
<div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a2e3eca63a9bb993caec5396ce5f48be9">   85</a></span>&#160;        Real <a class="code" href="class_s_p_h_1_1_base_particles.html#a2e3eca63a9bb993caec5396ce5f48be9">rho_0_</a>;            </div>
<div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a6e91adfca7218a340b59f6f1089d54d4">   86</a></span>&#160;        Real <a class="code" href="class_s_p_h_1_1_base_particles.html#a6e91adfca7218a340b59f6f1089d54d4">sigma_0_</a>;          </div>
<div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#ac5c08c3a1026bfd96469e902ebb9e934">   87</a></span>&#160;        Real <a class="code" href="class_s_p_h_1_1_base_particles.html#ac5c08c3a1026bfd96469e902ebb9e934">speed_max_</a>;        </div>
<div class="line"><a name="l00088"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#ab8225845e6682236f4c7b11c162f76f3">   88</a></span>&#160;        Real <a class="code" href="class_s_p_h_1_1_base_particles.html#ab8225845e6682236f4c7b11c162f76f3">signal_speed_max_</a>; </div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;        <span class="comment">//----------------------------------------------------------------------</span></div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;        <span class="comment">//Global information for defining particle groups</span></div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;        <span class="comment">//----------------------------------------------------------------------</span></div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        <span class="keywordtype">size_t</span> total_real_particles_;</div>
<div class="line"><a name="l00093"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a0501a7ad45113b5e671704ed6537c0fb">   93</a></span>&#160;        <span class="keywordtype">size_t</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#a0501a7ad45113b5e671704ed6537c0fb">real_particles_bound_</a>; </div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;        <span class="keywordtype">size_t</span> total_ghost_particles_;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;        <span class="comment">//----------------------------------------------------------------------</span></div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;        <span class="comment">//      Generalized particle data for parameterized management</span></div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;        <span class="comment">//----------------------------------------------------------------------</span></div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;        <a class="code" href="namespace_s_p_h.html#a25348a626f1536e232c52f9717945f59">ParticleData</a>    all_particle_data_;</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;        <a class="code" href="namespace_s_p_h.html#ad964bd16bd649c1ee72aa32164405435">ParticleDataMap</a> all_variable_maps_;</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160; </div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00103"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a7eda51aeb6fc94339f9d28575a0df063">  103</a></span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#a7eda51aeb6fc94339f9d28575a0df063">registerAVariable</a>(StdLargeVec&lt;VariableType&gt;&amp; variable_addrs,</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;            std::string variable_name, <a class="code" href="class_variable_type.html">VariableType</a> initial_value = <a class="code" href="class_variable_type.html">VariableType</a>(0))</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;        {</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;            <span class="keywordflow">if</span> (all_variable_maps_[DataTypeIndex].find(variable_name) == all_variable_maps_[DataTypeIndex].end())</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;            {</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;                variable_addrs.resize(<a class="code" href="class_s_p_h_1_1_base_particles.html#a0501a7ad45113b5e671704ed6537c0fb">real_particles_bound_</a>, initial_value);</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;                std::get&lt;DataTypeIndex&gt;(all_particle_data_).push_back(&amp;variable_addrs);</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;                all_variable_maps_[DataTypeIndex].insert(make_pair(variable_name, std::get&lt;DataTypeIndex&gt;(all_particle_data_).size() - 1));</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;            }</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;            <span class="keywordflow">else</span></div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;            {</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;                std::cout &lt;&lt; <span class="stringliteral">&quot;\n Error: the variable &#39;&quot;</span> &lt;&lt; variable_name &lt;&lt; <span class="stringliteral">&quot;&#39; has already been registered!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;                std::cout &lt;&lt; __FILE__ &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; __LINE__ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;                exit(1);</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;            }</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;        };</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;        </div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00123"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#ae9a9d99734c972e6cf1e4d9689545487">  123</a></span>&#160;        StdLargeVec&lt;VariableType&gt;* <a class="code" href="class_s_p_h_1_1_base_particles.html#ae9a9d99734c972e6cf1e4d9689545487">createAVariable</a>(std::string new_variable_name, <a class="code" href="class_variable_type.html">VariableType</a> initial_value = <a class="code" href="class_variable_type.html">VariableType</a>(0))</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;        {</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;            <span class="keywordflow">if</span> (all_variable_maps_[DataTypeIndex].find(new_variable_name) == all_variable_maps_[DataTypeIndex].end()) {</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;                StdLargeVec&lt;VariableType&gt;* new_variable = <span class="keyword">new</span> StdLargeVec&lt;VariableType&gt;;</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;                registerAVariable&lt;DataTypeIndex, VariableType&gt;(*new_variable, new_variable_name, initial_value);</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;                <span class="keywordflow">return</span> new_variable;</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;            }</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;            std::cout &lt;&lt; <span class="stringliteral">&quot;\n Warning: the variable &#39;&quot;</span> &lt;&lt; new_variable_name &lt;&lt; <span class="stringliteral">&quot;&#39; has already registered!&quot;</span>;</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;            std::cout &lt;&lt; <span class="stringliteral">&quot;\n So, the previously registered variable is assigned!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;            std::cout &lt;&lt; __FILE__ &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; __LINE__ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;            <span class="keywordflow">return</span> getVariableByName&lt;DataTypeIndex, VariableType&gt;(new_variable_name);</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        };</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160; </div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00139"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a603b1f4b21d060ef0a036e341578bbe1">  139</a></span>&#160;        StdLargeVec&lt;VariableType&gt;* <a class="code" href="class_s_p_h_1_1_base_particles.html#a603b1f4b21d060ef0a036e341578bbe1">createAVariable</a>(std::string new_variable_name, std::string old_variable_name)</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;        {</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;            <span class="keywordflow">if</span> (all_variable_maps_[DataTypeIndex].find(old_variable_name) != all_variable_maps_[DataTypeIndex].end())</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;            {</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;                <span class="keywordflow">if</span> (all_variable_maps_[DataTypeIndex].find(new_variable_name) == all_variable_maps_[DataTypeIndex].end())</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;                {</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;                    StdLargeVec&lt;VariableType&gt;* new_variable = <span class="keyword">new</span> StdLargeVec&lt;VariableType&gt;;</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;                    registerAVariable&lt;DataTypeIndex, VariableType&gt;(*new_variable, new_variable_name);</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;                    StdLargeVec&lt;VariableType&gt;* old_variable =</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;                        std::get&lt;DataTypeIndex&gt;(all_particle_data_)[all_variable_maps_[DataTypeIndex][old_variable_name]];</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;                    <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i != <a class="code" href="class_s_p_h_1_1_base_particles.html#a0501a7ad45113b5e671704ed6537c0fb">real_particles_bound_</a>; ++i) (*new_variable)[i] = (*old_variable)[i];</div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;                    <span class="keywordflow">return</span> new_variable;</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;                }</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;                std::cout &lt;&lt; <span class="stringliteral">&quot;\n Error: the new variable &#39;&quot;</span> &lt;&lt; new_variable_name &lt;&lt; <span class="stringliteral">&quot;&#39; has already been registered!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;                std::cout &lt;&lt; __FILE__ &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; __LINE__ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;                exit(1);</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;            }</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;            std::cout &lt;&lt; <span class="stringliteral">&quot;\n Error: the old variable &#39;&quot;</span> &lt;&lt; old_variable_name &lt;&lt; <span class="stringliteral">&quot;&#39; is not registered!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;            std::cout &lt;&lt; __FILE__ &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; __LINE__ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;            exit(1);</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;            <span class="keywordflow">return</span> NULL;</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;        };</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160; </div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00164"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a6dc2dba5a7b84f2e814fba642ea8cba0">  164</a></span>&#160;        StdLargeVec&lt;VariableType&gt;* <a class="code" href="class_s_p_h_1_1_base_particles.html#a6dc2dba5a7b84f2e814fba642ea8cba0">getVariableByName</a>(std::string variable_name)</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;        {</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;            <span class="keywordflow">if</span> (all_variable_maps_[DataTypeIndex].find(variable_name) != all_variable_maps_[DataTypeIndex].end())</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;                <span class="keywordflow">return</span> std::get&lt;DataTypeIndex&gt;(all_particle_data_)[all_variable_maps_[DataTypeIndex][variable_name]];</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160; </div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;            std::cout &lt;&lt; <span class="stringliteral">&quot;\n Error: the variable &#39;&quot;</span> &lt;&lt; variable_name &lt;&lt; <span class="stringliteral">&quot;&#39; is not registered!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;            std::cout &lt;&lt; __FILE__ &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; __LINE__ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;            exit(1);</div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;            <span class="keywordflow">return</span> NULL;</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;        };</div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160; </div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00177"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a0bfbad4c717e63466ba19c25e2f0d921">  177</a></span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#a0bfbad4c717e63466ba19c25e2f0d921">addAVariableToWrite</a>(std::string variable_name)</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;        {</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;            addAVariableNameToList&lt;DataTypeIndex, VariableType&gt;(variables_to_write_, variable_name);</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;        };</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160; </div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;        <span class="comment">//----------------------------------------------------------------------</span></div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;        <span class="comment">//      Particle data for sorting</span></div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;        <span class="comment">//----------------------------------------------------------------------</span></div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;        StdLargeVec&lt;size_t&gt; sequence_;</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;        StdLargeVec&lt;size_t&gt; sorted_id_;</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;        StdLargeVec&lt;size_t&gt; unsorted_id_;</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;        <a class="code" href="namespace_s_p_h.html#a25348a626f1536e232c52f9717945f59">ParticleData</a>    sortable_data_;</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;        <a class="code" href="namespace_s_p_h.html#ad964bd16bd649c1ee72aa32164405435">ParticleDataMap</a> sortable_variable_maps_;</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160; </div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00193"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a2e3222c982fea6397f428581109f3eab">  193</a></span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#a2e3222c982fea6397f428581109f3eab">registerASortableVariable</a>(std::string variable_name)</div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;        {</div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;            <span class="keywordflow">if</span> (sortable_variable_maps_[DataTypeIndex].find(variable_name) == sortable_variable_maps_[DataTypeIndex].end())</div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;            {</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;                <span class="keywordflow">if</span> (all_variable_maps_[DataTypeIndex].find(variable_name) != all_variable_maps_[DataTypeIndex].end())</div>
<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;                {</div>
<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;                    StdLargeVec&lt;VariableType&gt;* variable =</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;                        std::get&lt;DataTypeIndex&gt;(all_particle_data_)[all_variable_maps_[DataTypeIndex][variable_name]];</div>
<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;                    std::get&lt;DataTypeIndex&gt;(sortable_data_).push_back(variable);</div>
<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;                    sortable_variable_maps_[DataTypeIndex].insert(make_pair(variable_name, std::get&lt;DataTypeIndex&gt;(sortable_data_).size() - 1));</div>
<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;                }</div>
<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;                <span class="keywordflow">else</span></div>
<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;                {</div>
<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;                    std::cout &lt;&lt; <span class="stringliteral">&quot;\n Error: the variable &#39;&quot;</span> &lt;&lt; variable_name &lt;&lt; <span class="stringliteral">&quot;&#39; is not registered!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;                    std::cout &lt;&lt; __FILE__ &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; __LINE__ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;                    exit(1);</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;                }</div>
<div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;            }</div>
<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;            <span class="keywordflow">else</span></div>
<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;            {</div>
<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;                std::cout &lt;&lt; <span class="stringliteral">&quot;\n Warning: the variable &#39;&quot;</span> &lt;&lt; variable_name &lt;&lt; <span class="stringliteral">&quot;&#39; has already registered as a sortabele variable!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;                std::cout &lt;&lt; __FILE__ &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; __LINE__ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;            }</div>
<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;        };</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160; </div>
<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;        <a class="code" href="class_s_p_h_1_1_s_p_h_body.html">SPHBody</a>* getSPHBody() { <span class="keywordflow">return</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#a6c1c4100b6ee5f1691c1f719cdfb4f9c">body_</a>; };</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;        <span class="keywordtype">void</span> initializeABaseParticle(<a class="code" href="class_vecd.html">Vecd</a> pnt, <a class="code" href="class_real.html">Real</a> Vol_0);</div>
<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;        <span class="keywordtype">void</span> addABufferParticle();</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;        <span class="keywordtype">void</span> copyFromAnotherParticle(<span class="keywordtype">size_t</span> this_index, <span class="keywordtype">size_t</span> another_index);</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;        <span class="keywordtype">void</span> updateFromAnotherParticle(<span class="keywordtype">size_t</span> this_index, <span class="keywordtype">size_t</span> another_index);</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;        <span class="keywordtype">size_t</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#a7a07ff11234c5ec58ff67bbc4251f489">insertAGhostParticle</a>(<span class="keywordtype">size_t</span> index_i);</div>
<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;        <span class="keywordtype">void</span> switchToBufferParticle(<span class="keywordtype">size_t</span> index_i);</div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160; </div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#a2b77e1d04a5955cee741defc108c1b75">writeParticlesToVtuFile</a>(std::ofstream&amp; output_file);</div>
<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#af56c3d9d2de8bcd3811c77689101a352">writeParticlesToPltFile</a>(std::ofstream&amp; output_file);</div>
<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160; </div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;        <span class="keywordtype">void</span> writeParticlesToXmlForRestart(std::string&amp; filefullpath);</div>
<div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;        <span class="keywordtype">void</span> readParticleFromXmlForRestart(std::string&amp; filefullpath);</div>
<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;        XmlEngine* getReloadXmlEngine() { <span class="keywordflow">return</span> &amp;reload_xml_engine_; };</div>
<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;        <span class="keywordtype">void</span> writeToXmlForReloadParticle(std::string&amp; filefullpath);</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;        <span class="keywordtype">void</span> readFromXmlForReloadParticle(std::string&amp; filefullpath);</div>
<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160; </div>
<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;        <span class="keyword">virtual</span> BaseParticles* ThisObjectPtr() { <span class="keywordflow">return</span> <span class="keyword">this</span>; };</div>
<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160; </div>
<div class="line"><a name="l00240"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#aacd901a6230deb7dfb2b6e5ca192072c">  240</a></span>&#160;        <span class="keyword">virtual</span> Vecd <a class="code" href="class_s_p_h_1_1_base_particles.html#aacd901a6230deb7dfb2b6e5ca192072c">normalizeKernelGradient</a>(<span class="keywordtype">size_t</span> particle_index_i, Vecd&amp; kernel_gradient) { <span class="keywordflow">return</span> kernel_gradient; };</div>
<div class="line"><a name="l00242"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#affce1d43813839bdc86d091ff8c77e2d">  242</a></span>&#160;        <span class="keyword">virtual</span> Vecd <a class="code" href="class_s_p_h_1_1_base_particles.html#affce1d43813839bdc86d091ff8c77e2d">getKernelGradient</a>(<span class="keywordtype">size_t</span> particle_index_i, <span class="keywordtype">size_t</span> particle_index_j,</div>
<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;            Real dW_ij, Vecd&amp; e_ij) {</div>
<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;            <span class="keywordflow">return</span> dW_ij * e_ij;</div>
<div class="line"><a name="l00245"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a6c1c4100b6ee5f1691c1f719cdfb4f9c">  245</a></span>&#160;        };</div>
<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;    <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;        <a class="code" href="class_s_p_h_1_1_s_p_h_body.html">SPHBody</a>* <a class="code" href="class_s_p_h_1_1_base_particles.html#a6c1c4100b6ee5f1691c1f719cdfb4f9c">body_</a>; </div>
<div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;        std::string body_name_;</div>
<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;        <a class="code" href="class_s_p_h_1_1_xml_engine.html">XmlEngine</a> restart_xml_engine_;</div>
<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;        <a class="code" href="class_s_p_h_1_1_xml_engine.html">XmlEngine</a> reload_xml_engine_;</div>
<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;        <a class="code" href="namespace_s_p_h.html#a058f422301dc6671883a7ca3ef568075">ParticleVariableList</a> variables_to_write_;</div>
<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;        <a class="code" href="namespace_s_p_h.html#a058f422301dc6671883a7ca3ef568075">ParticleVariableList</a> variables_to_restart_;</div>
<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160; </div>
<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> writePltFileHeader(std::ofstream&amp; output_file);</div>
<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;        <span class="keyword">virtual</span> <span class="keywordtype">void</span> writePltFileParticleData(std::ofstream&amp; output_file, <span class="keywordtype">size_t</span> index_i);</div>
<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160; </div>
<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00259"></a><span class="lineno"><a class="line" href="class_s_p_h_1_1_base_particles.html#a94811df42700d9696b4f94264163c071">  259</a></span>&#160;        <span class="keywordtype">void</span> <a class="code" href="class_s_p_h_1_1_base_particles.html#a94811df42700d9696b4f94264163c071">addAVariableNameToList</a>(<a class="code" href="namespace_s_p_h.html#a058f422301dc6671883a7ca3ef568075">ParticleVariableList</a>&amp; variable_name_list, std::string variable_name)</div>
<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;        {</div>
<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;            <span class="keywordflow">if</span> (all_variable_maps_[DataTypeIndex].find(variable_name) != all_variable_maps_[DataTypeIndex].end())</div>
<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;            {</div>
<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;                <span class="keywordtype">bool</span> is_to_add = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;                <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i != variable_name_list[DataTypeIndex].size(); ++i) {</div>
<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;                    <span class="keywordflow">if</span> (variable_name_list[DataTypeIndex][i].first == variable_name) is_to_add = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;                }</div>
<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;                <span class="keywordflow">if</span> (is_to_add) {</div>
<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;                    <span class="keywordtype">size_t</span> variable_index = all_variable_maps_[DataTypeIndex][variable_name];</div>
<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;                    variable_name_list[DataTypeIndex].push_back(make_pair(variable_name, variable_index));</div>
<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;                }</div>
<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;            }</div>
<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;            <span class="keywordflow">else</span></div>
<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;            {</div>
<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;                std::cout &lt;&lt; <span class="stringliteral">&quot;\n Error: the variable &#39;&quot;</span> &lt;&lt; variable_name &lt;&lt; <span class="stringliteral">&quot;&#39; you are going to write is not particle data!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;                std::cout &lt;&lt; __FILE__ &lt;&lt; <span class="charliteral">&#39;:&#39;</span> &lt;&lt; __LINE__ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;                exit(1);</div>
<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;            }</div>
<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;        };</div>
<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160; </div>
<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00281"></a><span class="lineno"><a class="line" href="struct_s_p_h_1_1_base_particles_1_1add_a_particle_data_value.html">  281</a></span>&#160;        <span class="keyword">struct </span><a class="code" href="struct_s_p_h_1_1_base_particles_1_1add_a_particle_data_value.html">addAParticleDataValue</a></div>
<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;        {</div>
<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;            <span class="keywordtype">void</span> operator () (<a class="code" href="namespace_s_p_h.html#a25348a626f1536e232c52f9717945f59">ParticleData</a>&amp; particle_data)<span class="keyword"> const</span></div>
<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;<span class="keyword">            </span>{</div>
<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;                <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i != std::get&lt;DataTypeIndex&gt;(particle_data).size(); ++i)</div>
<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;                    std::get&lt;DataTypeIndex&gt;(particle_data)[i]-&gt;push_back(<a class="code" href="class_variable_type.html">VariableType</a>(0));</div>
<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;            };</div>
<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;        };</div>
<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160; </div>
<div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;        <span class="keyword">template</span>&lt;<span class="keywordtype">int</span> DataTypeIndex, <span class="keyword">typename</span> VariableType&gt;</div>
<div class="line"><a name="l00292"></a><span class="lineno"><a class="line" href="struct_s_p_h_1_1_base_particles_1_1loop_variabale_name_list.html">  292</a></span>&#160;        <span class="keyword">struct </span><a class="code" href="struct_s_p_h_1_1_base_particles_1_1loop_variabale_name_list.html">loopVariabaleNameList</a></div>
<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;        {</div>
<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;            <span class="keyword">template</span>&lt;<span class="keyword">typename</span> VariableOperation&gt;</div>
<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;            <span class="keywordtype">void</span> operator () (<a class="code" href="namespace_s_p_h.html#a25348a626f1536e232c52f9717945f59">ParticleData</a>&amp; particle_data,</div>
<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;                <a class="code" href="namespace_s_p_h.html#a058f422301dc6671883a7ca3ef568075">ParticleVariableList</a>&amp; variable_name_list, VariableOperation&amp; variable_operation)<span class="keyword"> const</span></div>
<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;<span class="keyword">            </span>{</div>
<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160;                <span class="keywordflow">for</span> (std::pair&lt;std::string, size_t&gt;&amp; name_index : variable_name_list[DataTypeIndex])</div>
<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;                {</div>
<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;                    std::string variable_name = name_index.first;</div>
<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;                    StdLargeVec&lt;VariableType&gt;&amp; variable = *(std::get&lt;DataTypeIndex&gt;(particle_data)[name_index.second]);</div>
<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;                    variable_operation(variable_name, variable);</div>
<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;                }</div>
<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;            };</div>
<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;        };</div>
<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;    };</div>
<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;}</div>
</div><!-- fragment --></div><!-- contents -->
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a2e3222c982fea6397f428581109f3eab"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a2e3222c982fea6397f428581109f3eab">SPH::BaseParticles::registerASortableVariable</a></div><div class="ttdeci">void registerASortableVariable(std::string variable_name)</div><div class="ttdef"><b>Definition:</b> base_particles.h:193</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_material_html"><div class="ttname"><a href="class_s_p_h_1_1_base_material.html">SPH::BaseMaterial</a></div><div class="ttdoc">Base of all materials.</div><div class="ttdef"><b>Definition:</b> base_material.h:52</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a6e91adfca7218a340b59f6f1089d54d4"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a6e91adfca7218a340b59f6f1089d54d4">SPH::BaseParticles::sigma_0_</a></div><div class="ttdeci">Real sigma_0_</div><div class="ttdef"><b>Definition:</b> base_particles.h:86</div></div>
<div class="ttc" id="astruct_s_p_h_1_1_base_particles_1_1add_a_particle_data_value_html"><div class="ttname"><a href="struct_s_p_h_1_1_base_particles_1_1add_a_particle_data_value.html">SPH::BaseParticles::addAParticleDataValue</a></div><div class="ttdef"><b>Definition:</b> base_particles.h:281</div></div>
<div class="ttc" id="anamespace_s_p_h_html_ad964bd16bd649c1ee72aa32164405435"><div class="ttname"><a href="namespace_s_p_h.html#ad964bd16bd649c1ee72aa32164405435">SPH::ParticleDataMap</a></div><div class="ttdeci">std::array&lt; std::map&lt; std::string, size_t &gt;, 4 &gt; ParticleDataMap</div><div class="ttdef"><b>Definition:</b> sph_data_conainers.h:27</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a0bfbad4c717e63466ba19c25e2f0d921"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a0bfbad4c717e63466ba19c25e2f0d921">SPH::BaseParticles::addAVariableToWrite</a></div><div class="ttdeci">void addAVariableToWrite(std::string variable_name)</div><div class="ttdef"><b>Definition:</b> base_particles.h:177</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a7a07ff11234c5ec58ff67bbc4251f489"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a7a07ff11234c5ec58ff67bbc4251f489">SPH::BaseParticles::insertAGhostParticle</a></div><div class="ttdeci">size_t insertAGhostParticle(size_t index_i)</div><div class="ttdef"><b>Definition:</b> base_particles.cpp:96</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a02c7fc3468dcf92154a1a60c2a170e1a"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a02c7fc3468dcf92154a1a60c2a170e1a">SPH::BaseParticles::mass_</a></div><div class="ttdeci">StdLargeVec&lt; Real &gt; mass_</div><div class="ttdef"><b>Definition:</b> base_particles.h:81</div></div>
<div class="ttc" id="aclass_vecd_html"><div class="ttname"><a href="class_vecd.html">Vecd</a></div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_ab8225845e6682236f4c7b11c162f76f3"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#ab8225845e6682236f4c7b11c162f76f3">SPH::BaseParticles::signal_speed_max_</a></div><div class="ttdeci">Real signal_speed_max_</div><div class="ttdef"><b>Definition:</b> base_particles.h:88</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a009d3448cf7a69fb162ede6afd34f5ee"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a009d3448cf7a69fb162ede6afd34f5ee">SPH::BaseParticles::dvel_dt_</a></div><div class="ttdeci">StdLargeVec&lt; Vecd &gt; dvel_dt_</div><div class="ttdef"><b>Definition:</b> base_particles.h:76</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_aeff9ca6449d936cf70a2ace2fb9d92d2"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#aeff9ca6449d936cf70a2ace2fb9d92d2">SPH::BaseParticles::Vol_</a></div><div class="ttdeci">StdLargeVec&lt; Real &gt; Vol_</div><div class="ttdef"><b>Definition:</b> base_particles.h:79</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a2e3eca63a9bb993caec5396ce5f48be9"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a2e3eca63a9bb993caec5396ce5f48be9">SPH::BaseParticles::rho_0_</a></div><div class="ttdeci">Real rho_0_</div><div class="ttdef"><b>Definition:</b> base_particles.h:85</div></div>
<div class="ttc" id="asph__data__conainers_8h_html"><div class="ttname"><a href="sph__data__conainers_8h.html">sph_data_conainers.h</a></div><div class="ttdoc">Set up of basic data structure.</div></div>
<div class="ttc" id="aclass_variable_type_html"><div class="ttname"><a href="class_variable_type.html">VariableType</a></div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a7eda51aeb6fc94339f9d28575a0df063"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a7eda51aeb6fc94339f9d28575a0df063">SPH::BaseParticles::registerAVariable</a></div><div class="ttdeci">void registerAVariable(StdLargeVec&lt; VariableType &gt; &amp;variable_addrs, std::string variable_name, VariableType initial_value=VariableType(0))</div><div class="ttdef"><b>Definition:</b> base_particles.h:103</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_adf142120d4165071c15dc4974f1f8df7"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#adf142120d4165071c15dc4974f1f8df7">SPH::BaseParticles::vel_n_</a></div><div class="ttdeci">StdLargeVec&lt; Vecd &gt; vel_n_</div><div class="ttdef"><b>Definition:</b> base_particles.h:75</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_ac5c08c3a1026bfd96469e902ebb9e934"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#ac5c08c3a1026bfd96469e902ebb9e934">SPH::BaseParticles::speed_max_</a></div><div class="ttdeci">Real speed_max_</div><div class="ttdef"><b>Definition:</b> base_particles.h:87</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a603b1f4b21d060ef0a036e341578bbe1"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a603b1f4b21d060ef0a036e341578bbe1">SPH::BaseParticles::createAVariable</a></div><div class="ttdeci">StdLargeVec&lt; VariableType &gt; * createAVariable(std::string new_variable_name, std::string old_variable_name)</div><div class="ttdef"><b>Definition:</b> base_particles.h:139</div></div>
<div class="ttc" id="axml__engine_8h_html"><div class="ttname"><a href="xml__engine_8h.html">xml_engine.h</a></div><div class="ttdoc">XML class for xml input and output, this is GUI of simbody xml parser.</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_affce1d43813839bdc86d091ff8c77e2d"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#affce1d43813839bdc86d091ff8c77e2d">SPH::BaseParticles::getKernelGradient</a></div><div class="ttdeci">virtual Vecd getKernelGradient(size_t particle_index_i, size_t particle_index_j, Real dW_ij, Vecd &amp;e_ij)</div><div class="ttdef"><b>Definition:</b> base_particles.h:242</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a6b6da33563d4725affb544d20848ea58"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a6b6da33563d4725affb544d20848ea58">SPH::BaseParticles::base_material_</a></div><div class="ttdeci">BaseMaterial * base_material_</div><div class="ttdef"><b>Definition:</b> base_particles.h:70</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a94811df42700d9696b4f94264163c071"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a94811df42700d9696b4f94264163c071">SPH::BaseParticles::addAVariableNameToList</a></div><div class="ttdeci">void addAVariableNameToList(ParticleVariableList &amp;variable_name_list, std::string variable_name)</div><div class="ttdef"><b>Definition:</b> base_particles.h:259</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html">SPH::BaseParticles</a></div><div class="ttdoc">Particles with essential (geometric and kinematic) data. There are three types of particles， all part...</div><div class="ttdef"><b>Definition:</b> base_particles.h:65</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a6c1c4100b6ee5f1691c1f719cdfb4f9c"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a6c1c4100b6ee5f1691c1f719cdfb4f9c">SPH::BaseParticles::body_</a></div><div class="ttdeci">SPHBody * body_</div><div class="ttdef"><b>Definition:</b> base_particles.h:245</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_aa6aa918af115e49d6b98137c00b015e7"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#aa6aa918af115e49d6b98137c00b015e7">SPH::BaseParticles::dvel_dt_others_</a></div><div class="ttdeci">StdLargeVec&lt; Vecd &gt; dvel_dt_others_</div><div class="ttdef"><b>Definition:</b> base_particles.h:77</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a6dc2dba5a7b84f2e814fba642ea8cba0"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a6dc2dba5a7b84f2e814fba642ea8cba0">SPH::BaseParticles::getVariableByName</a></div><div class="ttdeci">StdLargeVec&lt; VariableType &gt; * getVariableByName(std::string variable_name)</div><div class="ttdef"><b>Definition:</b> base_particles.h:164</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_ae9a9d99734c972e6cf1e4d9689545487"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#ae9a9d99734c972e6cf1e4d9689545487">SPH::BaseParticles::createAVariable</a></div><div class="ttdeci">StdLargeVec&lt; VariableType &gt; * createAVariable(std::string new_variable_name, VariableType initial_value=VariableType(0))</div><div class="ttdef"><b>Definition:</b> base_particles.h:123</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a2b77e1d04a5955cee741defc108c1b75"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a2b77e1d04a5955cee741defc108c1b75">SPH::BaseParticles::writeParticlesToVtuFile</a></div><div class="ttdeci">virtual void writeParticlesToVtuFile(std::ofstream &amp;output_file)</div><div class="ttdef"><b>Definition:</b> base_particles.cpp:124</div></div>
<div class="ttc" id="astruct_s_p_h_1_1_base_particles_1_1loop_variabale_name_list_html"><div class="ttname"><a href="struct_s_p_h_1_1_base_particles_1_1loop_variabale_name_list.html">SPH::BaseParticles::loopVariabaleNameList</a></div><div class="ttdef"><b>Definition:</b> base_particles.h:292</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a06420b0b549bd31847cc56cf86830091"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a06420b0b549bd31847cc56cf86830091">SPH::BaseParticles::rho_n_</a></div><div class="ttdeci">StdLargeVec&lt; Real &gt; rho_n_</div><div class="ttdef"><b>Definition:</b> base_particles.h:80</div></div>
<div class="ttc" id="anamespace_s_p_h_html_a25348a626f1536e232c52f9717945f59"><div class="ttname"><a href="namespace_s_p_h.html#a25348a626f1536e232c52f9717945f59">SPH::ParticleData</a></div><div class="ttdeci">std::tuple&lt; StdVec&lt; StdLargeVec&lt; Real &gt; * &gt;, StdVec&lt; StdLargeVec&lt; Vecd &gt; * &gt;, StdVec&lt; StdLargeVec&lt; Matd &gt; * &gt;, StdVec&lt; StdLargeVec&lt; int &gt; * &gt; &gt; ParticleData</div><div class="ttdef"><b>Definition:</b> sph_data_conainers.h:25</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_xml_engine_html"><div class="ttname"><a href="class_s_p_h_1_1_xml_engine.html">SPH::XmlEngine</a></div><div class="ttdef"><b>Definition:</b> xml_engine.h:54</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_aacd901a6230deb7dfb2b6e5ca192072c"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#aacd901a6230deb7dfb2b6e5ca192072c">SPH::BaseParticles::normalizeKernelGradient</a></div><div class="ttdeci">virtual Vecd normalizeKernelGradient(size_t particle_index_i, Vecd &amp;kernel_gradient)</div><div class="ttdef"><b>Definition:</b> base_particles.h:240</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_ad56cde78e1cf8ca57bae114d88a23c3c"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#ad56cde78e1cf8ca57bae114d88a23c3c">SPH::BaseParticles::pos_n_</a></div><div class="ttdeci">StdLargeVec&lt; Vecd &gt; pos_n_</div><div class="ttdef"><b>Definition:</b> base_particles.h:74</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_s_p_h_body_html"><div class="ttname"><a href="class_s_p_h_1_1_s_p_h_body.html">SPH::SPHBody</a></div><div class="ttdoc">SPHBody is a base body with basic data and functions. Its derived class can be a real fluid body,...</div><div class="ttdef"><b>Definition:</b> base_body.h:63</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_af56c3d9d2de8bcd3811c77689101a352"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#af56c3d9d2de8bcd3811c77689101a352">SPH::BaseParticles::writeParticlesToPltFile</a></div><div class="ttdeci">void writeParticlesToPltFile(std::ofstream &amp;output_file)</div><div class="ttdef"><b>Definition:</b> base_particles.cpp:259</div></div>
<div class="ttc" id="aclass_real_html"><div class="ttname"><a href="class_real.html">Real</a></div></div>
<div class="ttc" id="anamespace_s_p_h_html"><div class="ttname"><a href="namespace_s_p_h.html">SPH</a></div><div class="ttdef"><b>Definition:</b> solid_body_supplementary.cpp:9</div></div>
<div class="ttc" id="anamespace_s_p_h_html_a058f422301dc6671883a7ca3ef568075"><div class="ttname"><a href="namespace_s_p_h.html#a058f422301dc6671883a7ca3ef568075">SPH::ParticleVariableList</a></div><div class="ttdeci">std::array&lt; StdVec&lt; std::pair&lt; std::string, size_t &gt; &gt;, 4 &gt; ParticleVariableList</div><div class="ttdef"><b>Definition:</b> sph_data_conainers.h:29</div></div>
<div class="ttc" id="aclass_s_p_h_1_1_base_particles_html_a0501a7ad45113b5e671704ed6537c0fb"><div class="ttname"><a href="class_s_p_h_1_1_base_particles.html#a0501a7ad45113b5e671704ed6537c0fb">SPH::BaseParticles::real_particles_bound_</a></div><div class="ttdeci">size_t real_particles_bound_</div><div class="ttdef"><b>Definition:</b> base_particles.h:93</div></div>
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